SoftwareDuel

Pilot vs OnPay

A head-to-head comparison to help you pick the right tool

Pilot

Pilot is a managed accounting service that combines software with a dedicated team of bookkeepers to handle your books each month. Built for startups and small businesses that want accounting done for them.

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OnPay

OnPay is a full-service payroll and HR platform designed for small and mid-size businesses. It offers unlimited payroll runs, automatic tax filing, and built-in HR tools at an affordable flat rate. OnPay is consistently rated as one of the best value payroll solutions for small businesses and supports a wide range of industries including restaurants, farms, and nonprofits.

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Pros

  • Fully managed bookkeeping service
  • Dedicated finance experts included
  • Built specifically for startups
  • Integrates with common startup tools
  • Good for venture-backed companies

Cons

  • More expensive than DIY software
  • Less control over day-to-day bookkeeping
  • Not suited for businesses wanting to manage their own books
  • US-focused

Pros

  • Excellent value — flat monthly pricing with no per-run fees
  • Supports multiple pay schedules and unlimited payroll runs
  • Strong industry-specific features for restaurants, farms, and nonprofits
  • US-based customer support included on all plans

Cons

  • US-only — no international payroll support
  • Mobile app is less polished than competitors
  • Limited advanced HR features compared to full HRIS platforms

Our Take

Choose Pilot if startups and small businesses wanting fully managed bookkeeping with a dedicated team rather than diy software. Choose OnPay if small businesses wanting affordable, full-service payroll with no hidden fees.

Best For

Startups and small businesses wanting fully managed bookkeeping with a dedicated team rather than DIY software

Best For

Small businesses wanting affordable, full-service payroll with no hidden fees

Pilot vs OnPay: Accounting Software Comparison | SoftwareDuel